Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4988061

Identification

Species:
Sorghum bicolor
Gene model
4988061
Description
fgenesh1_pg.C_chr_7002151
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1A0A 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

903576 Score: 1

Arabidopsis thaliana

AT2G42280.1 Score: 1

Carica papaya

evm.TU.supercontig_84.89 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g39630.1 Score: 1

Populus trichocarpa

554947 Score: 1

Vitis vinifera

GSVIVP00024649001 Score: 1

Zea mays

GRMZM2G142932_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.30399
HO07E21w HO Hordeum vulgare cDNA clone HO07E21 3-PRIME, mRNA sequence /clone=HO07E21 /clone_end=3' /gb=CK567610
Hv.9772
HP05K08T HP Hordeum vulgare subsp. vulgare cDNA clone HP05K08 5-PRIME, mRNA sequence /clone=HP05K08 /clone_end=5' /gb=CB877633
Mtr.20639
NF008B07DT1F1058 Drought Medicago truncatula cDNA clone NF008B07DT 5', mRNA sequence /clone=NF008B07DT /clone_end=5' /gb=BQ143940
Os.5311
Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence /cds=p(479,1678) /gb=AK100106
Pba.8397
WS02526.BR_F13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_F13 5', mRNA sequence /clone=WS02526_F13 /clone_end=5' /gb=DT479591
Pth.14689
WS02513.B21_A16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02513_A16 3', mRNA sequence /clone=WS02513_A16 /clone_end=3' /gb=CV241712
Ptp.4951
X020H04 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU895220
Sbi.15489
CCC1_21_E03.b1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_21_E03_A007 3', mRNA sequence /clone=CCC1_21_E03_A007 /clone_end=3' /gb=CD222289 /gi=30965723
Vvi.12965
WIN0213.TB24_O22 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0213_O22 3', mRNA sequence /clone=WIN0213_O22 /clone_end=3' /gb=EC926912
Vvi.14484
CAB20006_IIIa_Fa_D09 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20006_IIIa_Fa_D09 5', mRNA sequence /clone=CAB20006_IIIa_Fa_D09 /clone_end=5' /gb=CF210217

Domain Architecture

HLH PF00010 4988061
DomainStartEndBit scoreE-value
HLH32637439.81.1e-08

Sequences