Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4988218

Identification

Species:
Sorghum bicolor
Gene model
4988218
Description
fgenesh1_pg.C_chr_7002308
Family
HB
3D structure (top 5)
1NK2 2E1O 2DMS 2R5Y 1PUF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Os.2364
Oryza sativa Japonica Group cDNA clone:001-127-B05, full insert sequence /gb=AK105484
Os.28034
Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence /cds=p(495,1304) /gb=AK106818
Os.38013
Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence /cds=p(287,1222) /gb=AK101522
Pba.9592
WS02549.C21_O11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O11 3', mRNA sequence /clone=WS02549_O11 /clone_end=3' /gb=DT492190
Pth.9592
Populus trichocarpa clone WS0126_C14 unknown mRNA /cds=p(603,1589) /gb=EF147945
Sbi.7425
RHOH1_19_D01.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_19_D01_A002 5', mRNA sequence /clone=RHOH1_19_D01_A002 /clone_end=5' /gb=CN126861 /gi=45952401

Domain Architecture

Homeobox PF00046 4988218
DomainStartEndBit scoreE-value
Homeobox197473.76.8e-19
HALZ7511965.91.5e-16

Sequences