Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4992404

Identification

Species:
Sorghum bicolor
Gene model
4992404
Description
fgenesh1_pg.C_chr_9002132
Family
bHLH
3D structure (top 5)
1HLO 1A0A 1AM9 1NKP 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os05g46370.1 Score: 1

Zea mays

GRMZM2G094819_P01 Score: 1
GRMZM2G094819_P02 Score: 1
GRMZM2G094892_P01 Score: 0.965
GRMZM2G094892_P02 Score: 0.965

Expression data

Expressed Sequence Tags

Hv.22093
HC08A19w HC Hordeum vulgare subsp. vulgare cDNA clone HC08A19 5-PRIME, mRNA sequence /clone=HC08A19 /clone_end=5' /gb=CB868366
Hv.30058
HV_CEa0006N02f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0006N02f, mRNA sequence /clone=HV_CEa0006N02f /gb=BF263465
Os.21231
Oryza sativa (japonica cultivar-group) Os01g0566800 (Os01g0566800) mRNA, complete cds /cds=p(1,1455) /gb=NM_001049899
Os.25546
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI223P22, full insert sequence /gb=CT831219

Domain Architecture

HLH PF00010 4992404
DomainStartEndBit scoreE-value
HLH29334021.60.00087

Sequences