Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4996284

Identification

Species:
Sorghum bicolor
Gene model
4996284
Description
estExt_fgenesh1_pg.C_chr_10186
Family
C2H2
3D structure (top 5)
1TF6 2JP9 2RPC 1A1H 2GLI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os03g62230.1 Score: 1

Physcomitrella patens

26749 Score: 1

Populus trichocarpa

274037 Score: 1

Selaginella moellendorffii

68340 Score: 1

Zea mays

AC210302.3_FGP042 Score: 1

Expression data

Expressed Sequence Tags

At.31036
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16 /cds=p(63,1184) /gb=AK227740
At.64018
Arabidopsis thaliana STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1); nucleic acid binding / transcription factor/ zinc ion binding (STOP1) mRNA, complete cds /cds=p(189,1688) /gb=NM_179415
Hv.21079
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf151p02, mRNA sequence /gb=AK252406
Os.51657
Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence /gb=AK063290
Os.5755
Oryza sativa Japonica Group cDNA clone:J023088A12, full insert sequence /gb=AK071320
Os.75821
Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence /gb=AK287605
Os.76617
Oryza sativa Japonica Group cDNA, clone: J100051N01, full insert sequence /gb=AK243285
Os.79948
Oryza sativa (japonica cultivar-group) Os02g0573000 (Os02g0573000) mRNA, complete cds /cds=p(1,1683) /gb=NM_001053734
Os.8796
Oryza sativa Japonica Group cDNA clone:J023123F03, full insert sequence /cds=p(1944,3512) /gb=AK100840
Sbi.4505
OX1_43_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_43_F03_A002 5', mRNA sequence /clone=OX1_43_F03_A002 /clone_end=5' /gb=CN136531 /gi=45969470

Domain Architecture

zf-C2H2 PF00096 4996284
DomainStartEndBit scoreE-value
zf-C2H2234532.22.1e-06

Sequences