Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4998933

Identification

Species:
Sorghum bicolor
Gene model
4998933
Description
estExt_fgenesh1_pg.C_chr_14933
Family
bHLH
3D structure (top 5)
1NKP 1AM9 1HLO 1NLW 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G10570.1 Score: 1

Carica papaya

evm.TU.supercontig_177.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g04310.1 Score: 1
LOC_Os03g04310.2 Score: 0.968

Vitis vinifera

GSVIVP00015050001 Score: 1

Zea mays

GRMZM2G173372_P01 Score: 1
GRMZM2G173534_P02 Score: 1

Expression data

Expressed Sequence Tags

At.28897
Arabidopsis thaliana BHLH093 (BETA HLH PROTEIN 93); DNA binding / transcription factor (BHLH093) mRNA, complete cds /cds=p(83,1138) /gb=NM_125962
At.32362
Arabidopsis thaliana clone bHLH061 putative bHLH transcription factor mRNA, complete cds /cds=p(1,948) /gb=AF488594
Hv.30941
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174i06, mRNA sequence /gb=AK252912
Mtr.1394
EST590599 KV2 Medicago truncatula cDNA clone pKV2-53B14, mRNA sequence /clone=pKV2-53B14 /gb=BM780023
Os.5860
Oryza sativa Japonica Group cDNA clone:J033145C17, full insert sequence /gb=AK103779
Vvi.5703
WIN082.C21_D19 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN082_D19 3', mRNA sequence /clone=WIN082_D19 /clone_end=3' /gb=EC959980

Domain Architecture

HLH PF00010 4998933
DomainStartEndBit scoreE-value
HLH19924843.58.6e-10

Sequences