Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5000135

Identification

Species:
Sorghum bicolor
Gene model
5000135
Description
estExt_fgenesh1_pg.C_chr_22502
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1MDY 1NKP 1A0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os09g31300.1 Score: 1
LOC_Os09g31300.2 Score: 0.96

Zea mays

GRMZM2G085467_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.30399
HO07E21w HO Hordeum vulgare cDNA clone HO07E21 3-PRIME, mRNA sequence /clone=HO07E21 /clone_end=3' /gb=CK567610
Hv.9772
HP05K08T HP Hordeum vulgare subsp. vulgare cDNA clone HP05K08 5-PRIME, mRNA sequence /clone=HP05K08 /clone_end=5' /gb=CB877633
Mtr.20639
NF008B07DT1F1058 Drought Medicago truncatula cDNA clone NF008B07DT 5', mRNA sequence /clone=NF008B07DT /clone_end=5' /gb=BQ143940
Os.5311
Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence /cds=p(479,1678) /gb=AK100106
Pth.14689
WS02513.B21_A16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02513_A16 3', mRNA sequence /clone=WS02513_A16 /clone_end=3' /gb=CV241712
Sbi.15479
CCC1_24_D10.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_24_D10_A007 5', mRNA sequence /clone=CCC1_24_D10_A007 /clone_end=5' /gb=CD222844 /gi=30966278
Sbi.15489
CCC1_21_E03.b1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_21_E03_A007 3', mRNA sequence /clone=CCC1_21_E03_A007 /clone_end=3' /gb=CD222289 /gi=30965723

Domain Architecture

HLH PF00010 5000135
DomainStartEndBit scoreE-value
HLH36040840.37.8e-09

Sequences