Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5000178

Identification

Species:
Sorghum bicolor
Gene model
5000178
Description
estExt_fgenesh1_pg.C_chr_22584
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1A0A 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os09g32510.1 Score: 1
LOC_Os09g32510.2 Score: 0.943

Physcomitrella patens

148564 Score: 1
48139 Score: 1

Sorghum bicolor

5000178 Score: 1
5028369 Score: 1

Zea mays

GRMZM2G033215_P02 Score: 1
GRMZM2G144275_P04 Score: 1
GRMZM2G144275_P05 Score: 1

Expression data

Expressed Sequence Tags

At.28096
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G68920) mRNA, complete cds /cds=p(609,2069) /gb=NM_105566
At.40357
Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL25-20-F07 /cds=p(183,1553) /gb=AK176663
At.41276
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G26260) mRNA, complete cds /cds=p(111,1283) /gb=NM_102390
At.43391
Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL24-20-N07 /cds=p(842,1942) /gb=AK230347
At.43769
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT5G48560) mRNA, complete cds /cds=p(155,1651) /gb=NM_124232
At.455
Arabidopsis thaliana ZCW32 (BIGPETAL, BIGPETALUB); DNA binding / transcription factor (ZCW32) mRNA, complete cds /cds=p(172,1203) /gb=NM_179498
At.6666
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT3G23690) mRNA, complete cds /cds=p(358,1473) /gb=NM_113273
Hv.20041
HVSMEg0019A10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0019A10f, mRNA sequence /clone=HVSMEg0019A10f /gb=BE455695
Mtr.14730
EST5311646 GESD Medicago truncatula cDNA clone pGESD4O22 5' end, mRNA sequence /clone=pGESD4O22 /clone_end=5' /gb=BI309896
Os.10830
Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence /gb=AK099291
Os.32526
Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence /gb=AK103853
Os.5763
Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence /cds=p(332,1777) /gb=AK101063
Os.87970
Oryza sativa Japonica Group cDNA clone:002-146-G10, full insert sequence /cds=p(169,960) /gb=AK108605
Sbi.13364
PH1_26_A04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_26_A04_A002 5', mRNA sequence /clone=PH1_26_A04_A002 /clone_end=5' /gb=CF430188 /gi=34442889
Sbi.9642
ANR1_13_G08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_13_G08_A002 3', mRNA sequence /clone=ANR1_13_G08_A002 /clone_end=3' /gb=CX609545 /gi=57808265
Vvi.3426
VV_PEd19d09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV243087

Domain Architecture

HLH PF00010 5000178
DomainStartEndBit scoreE-value
HLH16521530.38.1e-06

Sequences