Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5001700

Identification

Species:
Sorghum bicolor
Gene model
5001700
Description
estExt_fgenesh1_pg.C_chr_31073
Family
C3H
3D structure (top 5)
1M9O 2RPP 2CQE 2D9N 2E5S
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os01g15350.1 Score: 1

Zea mays

GRMZM2G069009_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21006
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G47850) mRNA, complete cds /cds=p(281,1687) /gb=NM_130352
Os.9029
Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence /cds=p(298,1698) /gb=AK073920
Os.9931
Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence /cds=p(333,1727) /gb=AK111633
Vvi.8684
WIN1149.C21_O06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1149_O06 3', mRNA sequence /clone=WIN1149_O06 /clone_end=3' /gb=EC993939

Domain Architecture

zf-CCCH PF00642 5001700
DomainStartEndBit scoreE-value
zf-CCCH426842.91.3e-09
zf-CCCH9011646.11.4e-10
zf-CCCH13416043.58.3e-10
zf-CCCH28831444.54e-10
zf-CCCH34837431.92.6e-06

Sequences