Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5002187

Identification

Species:
Sorghum bicolor
Gene model
5002187
Description
estExt_fgenesh1_pg.C_chr_32190
Family
bHLH
3D structure (top 5)
1NKP 1NLW 1AM9 1HLO 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479503 Score: 1

Arabidopsis thaliana

AT3G19860.2 Score: 1

Carica papaya

evm.TU.supercontig_17.140 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g23823.1 Score: 1

Physcomitrella patens

167103 Score: 1

Populus trichocarpa

195904 Score: 1

Vitis vinifera

GSVIVP00036056001 Score: 1

Zea mays

GRMZM2G114444_P02 Score: 1
GRMZM2G165316_P02 Score: 1

Expression data

Expressed Sequence Tags

At.20167
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT3G19860) mRNA, complete cds /cds=p(237,1091) /gb=NM_112876
Mtr.7796
NF040B02ST1F1000 Developing stem Medicago truncatula cDNA clone NF040B02ST 5', mRNA sequence /clone=NF040B02ST /clone_end=5' /gb=AW691300
Os.52897
Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence /cds=p(78,1109) /gb=AK069790
Sbi.17523
NIT1_26_C12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_26_C12_A002 5', mRNA sequence /clone=NIT1_26_C12_A002 /clone_end=5' /gb=CF433391 /gi=34446092
Vvi.22531
WIN0542.C21_B21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0542_B21 3', mRNA sequence /clone=WIN0542_B21 /clone_end=3' /gb=EC947590
Vvi.23613
sT7aVVM012B02015 VVM Vitis vinifera cDNA clone VVM012B02015 5' similar to emb_CAN69588.1 hypothetical protein [Vitis vinifera]. Expect = 1e-117, mRNA sequence /clone=VVM012B02015 /clone_end=5' /gb=FC065166

Domain Architecture

HLH PF00010 5002187
DomainStartEndBit scoreE-value
HLH308034.25.1e-07

Sequences