Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5002569

Identification

Species:
Sorghum bicolor
Gene model
5002569
Description
estExt_fgenesh1_pg.C_chr_32903
Family
HSF
3D structure (top 5)
1HKS 3HTS 1C1G 2CH7 1CII
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

492972 Score: 1

Arabidopsis thaliana

AT5G45710.1 Score: 1

Carica papaya

evm.TU.supercontig_124.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g54550.1 Score: 1

Populus trichocarpa

758729 Score: 1

Vitis vinifera

GSVIVP00018812001 Score: 1

Zea mays

GRMZM2G118453_P01 Score: 1

Expression data

Expressed Sequence Tags

At.5971
Arabidopsis thaliana ATHSFA1E (Arabidopsis thaliana heat shock transcription factor A1E); DNA binding / transcription factor (ATHSFA1E) mRNA, complete cds /cds=p(143,1549) /gb=NM_111169
Hv.9738
HV_CEb0010C13f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0010C13f, mRNA sequence /clone=HV_CEb0010C13f /gb=BE216310
Os.2152
Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence /cds=p(181,1503) /gb=AK109856
Os.59230
Oryza sativa Japonica Group cDNA clone:J013165J23, full insert sequence /gb=AK072210
Os.9717
Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence /cds=p(126,1646) /gb=AK100430
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Ppa.16751
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_206139) mRNA, partial cds /cds=p(377,1177) /gb=XM_001758240
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Sbi.6301
PIC1_6_H03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence /gb=BM327085
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 5002569
DomainStartEndBit scoreE-value
HSF_DNA-bind12182185.51.5e-52

Sequences