Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5003442

Identification

Species:
Sorghum bicolor
Gene model
5003442
Description
estExt_fgenesh1_pg.C_chr_40111
Family
bHLH
3D structure (top 5)
1NKP 1AM9 1NLW 1HLO 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Micromonas pusilla CCMP1545

47661 Score: 1

Micromonas sp. RCC299

109344 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g02480.1 Score: 1
LOC_Os02g02480.3 Score: 1

Physcomitrella patens

195760 Score: 1

Selaginella moellendorffii

165311 Score: 1
165556 Score: 1

Zea mays

GRMZM2G018526_P03 Score: 1
GRMZM2G048873_P04 Score: 1
GRMZM2G153707_P04 Score: 1

Expression data

Expressed Sequence Tags

At.9639
Arabidopsis thaliana ILR3 (IAA-LEUCINE RESISTANT3); DNA binding / transcription factor (ILR3) mRNA, complete cds /cds=p(216,920) /gb=NM_124849
Hv.8928
HVSMEh0101E03f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0101E03f, mRNA sequence /clone=HVSMEh0101E03f /gb=BE602700
Mtr.2996
Medicago truncatula clone MTYF5_F6_F7_F81G-G-2 unknown mRNA /cds=p(50,742) /gb=BT051691
Mtr.3417
Medicago truncatula clone MTYF5_F6_F7_F81G-O-15 unknown mRNA /cds=p(264,977) /gb=BT051569
Os.17893
Oryza sativa Japonica Group cDNA clone:J033129B02, full insert sequence /cds=p(262,972) /gb=AK103434
Os.26508
Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence /gb=AK068361
Pba.11311
WS02542.B21_J12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_J12 3', mRNA sequence /clone=WS02542_J12 /clone_end=3' /gb=DT489570
Pba.8254
WS02527.BR_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_H13 5', mRNA sequence /clone=WS02527_H13 /clone_end=5' /gb=DT479950
Ppa.11355
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_195760) mRNA, complete cds /cds=p(503,1219) /gb=XM_001778832
Ppa.5860
DC956470 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs13l02 3', mRNA sequence /clone=ppgs13l02 /clone_end=3' /gb=DC956470
Pth.8254
WS02527.BR_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_H13 5', mRNA sequence /clone=WS02527_H13 /clone_end=5' /gb=DT479950
Sbi.14358
RHOH1_40_B02.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_40_B02_A002 3', mRNA sequence /clone=RHOH1_40_B02_A002 /clone_end=3' /gb=CN130210 /gi=45958481
Sbi.4978
OX1_39_F05.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_39_F05_A002 5', mRNA sequence /clone=OX1_39_F05_A002 /clone_end=5' /gb=CN135924 /gi=45968434
Vvi.1904
VV_PEd05c12.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242301
Vvi.8594
WIN0814.C21_N14 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0814_N14 3', mRNA sequence /clone=WIN0814_N14 /clone_end=3' /gb=EC962566

Domain Architecture

HLH PF00010 5003442
DomainStartEndBit scoreE-value
HLH6211341.53.4e-09

Sequences