Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5003468

Identification

Species:
Sorghum bicolor
Gene model
5003468
Description
estExt_fgenesh1_pg.C_chr_40169
Family
CSD
3D structure (top 5)
1H95 1MJC 1G6P 2YTY 3CAM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

491032 Score: 1

Arabidopsis thaliana

AT4G36020.1 Score: 1

Carica papaya

evm.TU.supercontig_6.256 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g02870.1 Score: 1

Physcomitrella patens

183211 Score: 1

Populus trichocarpa

796697 Score: 1

Zea mays

GRMZM2G090076_P01 Score: 1
GRMZM2G179385_P01 Score: 1

Expression data

Expressed Sequence Tags

At.1680
45-L021843-065-003-A03S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 003-A03, mRNA sequence /clone=003-A03 /gb=DR750668
At.24348
glycine-rich protein {clone atGRP-2} [Arabidopsis thaliana, C24, mRNA, 965 nt] /cds=p(56,667) /gb=S47408
At.73207
Arabidopsis thaliana CSDP2/GRP2 (COLD SHOCK DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2); nucleic acid binding (CSDP2/GRP2) mRNA, complete cds /cds=p(332,943) /gb=NM_120029
Mtr.7513
EST1225479 MTY Medicago truncatula cDNA clone MTYAI21, mRNA sequence /clone=MTYAI21 /gb=DW016518
Os.4724
Oryza sativa Japonica Group cDNA clone:J023061H10, full insert sequence /gb=AK070711
Os.54054
Oryza sativa Japonica Group cDNA, clone: J100044F18, full insert sequence /gb=AK243227
Ppa.15638
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_180264) mRNA, complete cds /cds=p(263,826) /gb=XM_001760093
Ppa.598
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_183211) mRNA, complete cds /cds=p(1,597) /gb=XM_001763837
Sbi.13232
DG1_3_E11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW676965

Domain Architecture

CSD PF00313 5003468
DomainStartEndBit scoreE-value
CSD673136.96.5e-38
zf-CCHC12414141.24e-09
zf-CCHC16117840.56.5e-09
zf-CCHC19821541.92.5e-09
zf-CCHC23425139.71.1e-08

Sequences