Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5004205

Identification

Species:
Sorghum bicolor
Gene model
5004205
Description
estExt_fgenesh1_pg.C_chr_41812
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1NLW 1A0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os02g35660.1 Score: 1

Zea mays

GRMZM2G038760_P01 Score: 1
GRMZM2G117690_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20028
Arabidopsis thaliana UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor (UNE12) mRNA, complete cds /cds=p(186,1118) /gb=NM_116493
At.20497
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G03040) mRNA, complete cds /cds=p(175,1083) /gb=NM_100185
At.20792
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT2G24260) mRNA, complete cds /cds=p(46,1098) /gb=NM_127988
At.29300
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT5G58010) mRNA, complete cds /cds=p(1,894) /gb=NM_125186
At.31786
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT4G30980) mRNA, complete cds /cds=p(52,984) /gb=NM_119246
Hv.30442
BES1824102b18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010B182 5-PRIME, mRNA sequence /clone=MPMGp2010B18102 /clone_end=5' /gb=CK123102
Os.59303
Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence /cds=p(249,1823) /gb=AK241924
Os.8790
Oryza sativa Japonica Group cDNA clone:J013042L14, full insert sequence /cds=p(433,1869) /gb=AK065667
Pba.1507
WS02516.B21.1_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_L07 3', mRNA sequence /clone=WS02516_L07 /clone_end=3' /gb=CV243029
Ppa.17602
CAYY6280.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY6280 5', mRNA sequence /clone=CAYY6280 /clone_end=5' /gb=FC369174
Pth.1507
WS02516.B21.1_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_L07 3', mRNA sequence /clone=WS02516_L07 /clone_end=3' /gb=CV243029
Sbi.16108
CCC1_16_H08.b1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_16_H08_A007 3', mRNA sequence /clone=CCC1_16_H08_A007 /clone_end=3' /gb=CD229471 /gi=30972905
Sbi.9904
CCC1_16_H08.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_16_H08_A007 5', mRNA sequence /clone=CCC1_16_H08_A007 /clone_end=5' /gb=CD229551 /gi=30972985
Vvi.6555
VV_PEd01f08.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241598

Domain Architecture

HLH PF00010 5004205
DomainStartEndBit scoreE-value
HLH325374461.4e-10

Sequences