Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5006273

Identification

Species:
Sorghum bicolor
Gene model
5006273
Description
estExt_fgenesh1_pg.C_chr_60987
Family
C3H
3D structure (top 5)
2RPP 3D2N 3D2Q 2E5S 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os04g35800.1 Score: 1

Selaginella moellendorffii

440790 Score: 1

Zea mays

GRMZM2G021834_P01 Score: 1
GRMZM2G021834_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.18469
HVSMEc0008L20f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0008L20f, mRNA sequence /clone=HVSMEc0008L20f /gb=BF618929
Os.51094
Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence /gb=AK060634
Sbi.8530
OX1_10_D08.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_10_D08_A002 5', mRNA sequence /clone=OX1_10_D08_A002 /clone_end=5' /gb=CN133180 /gi=45963830

Domain Architecture

zf-CCCH PF00642 5006273
DomainStartEndBit scoreE-value
zf-CCCH941208.50.11
zf-CCCH1291544.80.35
zf-CCCH17219814.90.016
zf-CCCH202226100.073
zf-CCCH27429821.60.0022
zf-CCCH30633013.70.024

Sequences