Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5006733

Identification

Species:
Sorghum bicolor
Gene model
5006733
Description
estExt_fgenesh1_pg.C_chr_61817
Family
bHLH
3D structure (top 5)
1HLO 1NKP 1AM9 1NLW 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.27189
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45m21, mRNA sequence /gb=AK249503
Hv.30821
HX04H02r HX Hordeum vulgare subsp. vulgare cDNA clone HX04H02 5-PRIME, mRNA sequence /clone=HX04H02 /clone_end=5' /gb=BQ470921
Os.2233
Oryza sativa transcriptional activator (Ra) mRNA, complete cds /cds=p(456,2216) /gb=U39860
Os.49810
Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence /cds=p(137,1816) /gb=AK111704
Os.57542
Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds /cds=p(55,1410) /gb=AB021080
Os.79112
Oryza sativa (japonica cultivar-group) Os01g0576100 (Os01g0576100) mRNA, complete cds /cds=p(1,786) /gb=NM_001049926
Os.79473
Oryza sativa (japonica cultivar-group) Os11g0258700 (Os11g0258700) mRNA, complete cds /cds=p(1,1377) /gb=NM_001074174

Domain Architecture

HLH PF00010 5006733
DomainStartEndBit scoreE-value
HLH31136052.51.7e-12

Sequences