Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5007458

Identification

Species:
Sorghum bicolor
Gene model
5007458
Description
estExt_fgenesh1_pg.C_chr_70317
Family
bHLH
3D structure (top 5)
1NKP 1NLW 1AM9 1HLO 2QL2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

495549 Score: 1

Arabidopsis thaliana

AT5G54680.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g04390.2 Score: 1

Populus trichocarpa

660506 Score: 1

Zea mays

GRMZM2G093744_P01 Score: 1

Expression data

Expressed Sequence Tags

At.9639
Arabidopsis thaliana ILR3 (IAA-LEUCINE RESISTANT3); DNA binding / transcription factor (ILR3) mRNA, complete cds /cds=p(216,920) /gb=NM_124849
Hv.10649
RUS107D12w HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61A23, mRNA sequence /clone=HZ61A23 /gb=FD526670
Mtr.2996
Medicago truncatula clone MTYF5_F6_F7_F81G-G-2 unknown mRNA /cds=p(50,742) /gb=BT051691
Mtr.3417
Medicago truncatula clone MTYF5_F6_F7_F81G-O-15 unknown mRNA /cds=p(264,977) /gb=BT051569
Os.18333
CT850235 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRA121I02, mRNA sequence /clone=OSIGCRA121I02 /gb=CT850235
Os.26508
Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence /gb=AK068361
Pba.11311
WS02542.B21_J12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_J12 3', mRNA sequence /clone=WS02542_J12 /clone_end=3' /gb=DT489570
Pba.8072
WS02542.B21_A09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_A09 3', mRNA sequence /clone=WS02542_A09 /clone_end=3' /gb=DT489363
Pba.8254
WS02527.BR_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_H13 5', mRNA sequence /clone=WS02527_H13 /clone_end=5' /gb=DT479950
Pth.8072
WS02542.B21_A09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_A09 3', mRNA sequence /clone=WS02542_A09 /clone_end=3' /gb=DT489363
Pth.8254
WS02527.BR_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_H13 5', mRNA sequence /clone=WS02527_H13 /clone_end=5' /gb=DT479950
Sbi.14358
RHOH1_40_B02.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_40_B02_A002 3', mRNA sequence /clone=RHOH1_40_B02_A002 /clone_end=3' /gb=CN130210 /gi=45958481
Vvi.16295
WIN0419.C21_B07 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN0419_B07 3', mRNA sequence /clone=WIN0419_B07 /clone_end=3' /gb=EC933704
Vvi.1904
VV_PEd05c12.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242301
Vvi.8594
WIN0814.C21_N14 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0814_N14 3', mRNA sequence /clone=WIN0814_N14 /clone_end=3' /gb=EC962566

Domain Architecture

HLH PF00010 5007458
DomainStartEndBit scoreE-value
HLH8113235.32.5e-07

Sequences