Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5008647

Identification

Species:
Sorghum bicolor
Gene model
5008647
Description
estExt_fgenesh1_pg.C_chr_80960
Family
C3H
3D structure (top 5)
1M9O 2CQE 2E5S 2D9N 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G63260.1 Score: 1

Carica papaya

evm.TU.supercontig_4.51 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g18120.2 Score: 1
LOC_Os12g18120.1 Score: 0.981

Populus trichocarpa

422794 Score: 1

Vitis vinifera

GSVIVP00015900001 Score: 1

Zea mays

GRMZM2G006493_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.21522
AV918456 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare subsp. vulgare cDNA clone bags21c02 3', mRNA sequence /clone=bags21c02 /clone_end=3' /gb=AV918456
Os.14312
Oryza sativa (japonica cultivar-group) Os12g0278800 (Os12g0278800) mRNA, complete cds /cds=p(132,1721) /gb=NM_001073101
Sbi.9737
OX1_36_F07.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_36_F07_A002 3', mRNA sequence /clone=OX1_36_F07_A002 /clone_end=3' /gb=CN140448 /gi=45976430

Domain Architecture

zf-CCCH PF00642 5008647
DomainStartEndBit scoreE-value
zf-CCCH10513140.85.4e-09
zf-CCCH24927532.22.1e-06
zf-CCCH29732342.31.8e-09
zf-CCCH44447030.47.1e-06
zf-CCCH48951532.91.3e-06

Sequences