Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5009770

Identification

Species:
Sorghum bicolor
Gene model
5009770
Description
estExt_fgenesh1_pg.C_chr_91613
Family
bHLH
3D structure (top 5)
1NKP 1HLO 1NLW 1AM9 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os05g38140.1 Score: 1

Zea mays

GRMZM2G061906_P01 Score: 1
GRMZM2G144336_P01 Score: 1

Expression data

Expressed Sequence Tags

At.9639
Arabidopsis thaliana ILR3 (IAA-LEUCINE RESISTANT3); DNA binding / transcription factor (ILR3) mRNA, complete cds /cds=p(216,920) /gb=NM_124849
Hv.1803
HV_CEb0001B02f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0001B02f, mRNA sequence /clone=HV_CEb0001B02f /gb=BE213711
Hv.24177
HO05L22w HO Hordeum vulgare cDNA clone HO05L22 3-PRIME, mRNA sequence /clone=HO05L22 /clone_end=3' /gb=CK567115
Os.17893
Oryza sativa Japonica Group cDNA clone:J033129B02, full insert sequence /cds=p(262,972) /gb=AK103434
Os.49628
RECm1586 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI008F21, BI107C03, EI054A24, BI122A18, EI077A20, EI114M04 5', mRNA sequence /clone=EI008F21,_BI107C03,_EI054A24,_BI122A18,_EI077A20, _EI114M04 /cl
Ppa.5860
DC956470 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs13l02 3', mRNA sequence /clone=ppgs13l02 /clone_end=3' /gb=DC956470
Sbi.15134
WOUND1_28_F05.b2_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_28_F05_A002 3', mRNA sequence /clone=WOUND1_28_F05_A002 /clone_end=3' /gb=CN145329 /gi=45984459
Sbi.4978
OX1_39_F05.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_39_F05_A002 5', mRNA sequence /clone=OX1_39_F05_A002 /clone_end=5' /gb=CN135924 /gi=45968434
Vvi.1904
VV_PEd05c12.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242301
Vvi.8594
WIN0814.C21_N14 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0814_N14 3', mRNA sequence /clone=WIN0814_N14 /clone_end=3' /gb=EC962566

Domain Architecture

HLH PF00010 5009770
DomainStartEndBit scoreE-value
HLH7212334.93.3e-07

Sequences