Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5010228

Identification

Species:
Sorghum bicolor
Gene model
5010228
Description
estExt_fgenesh1_pg.C_chr_92432
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 2A6H 1L9Z 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489269 Score: 1

Arabidopsis thaliana

AT5G24120.1 Score: 1

Carica papaya

evm.TU.supercontig_3.55 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g50930.1 Score: 1

Physcomitrella patens

230140 Score: 1

Populus trichocarpa

277462 Score: 1

Selaginella moellendorffii

53596 Score: 1

Vitis vinifera

GSVIVP00006496001 Score: 1

Zea mays

GRMZM2G077436_P01 Score: 1

Expression data

Expressed Sequence Tags

At.5425
Arabidopsis thaliana SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (SIGE) mRNA, complete cds /cds=p(108,1661) /gb=NM_122317
Hv.13889
BJ484953 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56o16 3', mRNA sequence /clone=bah56o16 /clone_end=3' /gb=BJ484953
Os.57417
Oryza sativa Japonica Group cDNA clone:001-201-C12, full insert sequence /gb=AK105697
Sbi.8779
WOUND1_54_B02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_54_B02_A002 5', mRNA sequence /clone=WOUND1_54_B02_A002 /clone_end=5' /gb=CN148150 /gi=45989123

Domain Architecture

Sigma70_r2 PF04542 5010228
DomainStartEndBit scoreE-value
Sigma70_r2267340452.9e-10
Sigma70_r334342455.22.5e-13
Sigma70_r443749066.78.4e-17

Sequences