Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5011593

Identification

Species:
Sorghum bicolor
Gene model
5011593
Description
estExt_fgenesh1_pg.C_100038
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 2A6H 1L9Z 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470915 Score: 1

Arabidopsis thaliana

AT1G08540.1 Score: 1

Cyanidioschyzon merolae

CMM072C Score: 1

Oryza sativa subsp. japonica

LOC_Os11g26160.1 Score: 1

Populus trichocarpa

780378 Score: 1

Zea mays

GRMZM2G143392_P01 Score: 1

Expression data

Expressed Sequence Tags

At.23349
Arabidopsis thaliana sigma factor 2 (SIG2) mRNA, nuclear gene encoding chloroplast protein, complete cds /cds=p(15,1739) /gb=AF015543
Hv.20577
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf170f11, mRNA sequence /gb=AK252843
Hv.27771
BJ481686 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah61h18 5', mRNA sequence /clone=bah61h18 /clone_end=5' /gb=BJ481686
Mtr.9120
EST457795 DSIL Medicago truncatula cDNA clone pDSIL-23E14, mRNA sequence /clone=pDSIL-23E14 /gb=BF520325
Os.28459
Oryza sativa Japonica Group cDNA clone:J013054G24, full insert sequence /gb=AK066099
Os.88896
Oryza sativa Japonica Group cDNA clone:001-034-B01, full insert sequence /cds=p(243,1865) /gb=AK060821
Sbi.2940
WOUND1_14_F02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_14_F02_A002 5', mRNA sequence /clone=WOUND1_14_F02_A002 /clone_end=5' /gb=CN143202 /gi=45980978

Domain Architecture

Sigma70_r2 PF04542 5011593
DomainStartEndBit scoreE-value
Sigma70_r231038070.65.7e-18
Sigma70_r338446595.51.8e-25
Sigma70_r447753099.71e-26

Sequences