Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 50215

Identification

Species:
Physcomitrella patens
Gene model
50215
Description
gw1.6.284.1
Family
ARF
3D structure (top 5)
1WID 1YEL
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

473256 Score: 1

Selaginella moellendorffii

181406 Score: 1

Expression data

Expressed Sequence Tags

At.10488
Arabidopsis thaliana ARF19 (AUXIN RESPONSE FACTOR 11); transcription factor (ARF19) mRNA, complete cds /cds=p(309,3569) /gb=NM_101780
At.10494
Arabidopsis thaliana MP (MONOPTEROS); transcription factor (MP) mRNA, complete cds /cds=p(475,3183) /gb=NM_101840
At.21704
Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription factor (ARF2) mRNA, complete cds /cds=p(502,3081) /gb=NM_180913
At.21939
Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor (ARF6) mRNA, complete cds /cds=p(764,3565) /gb=NM_102771
At.59645
Arabidopsis thaliana BIPOSTO (BIP) mRNA, complete cds /cds=p(610,4107) /gb=AF022368
Os.18308
Oryza sativa Japonica Group cDNA clone:J013091D19, full insert sequence /cds=p(290,2812) /gb=AK067061
Os.22271
Oryza sativa Japonica Group cDNA clone:J033125G19, full insert sequence /gb=AK103312
Os.22272
Oryza sativa Japonica Group cDNA clone:J033074F07, full insert sequence /gb=AK121703
Os.22750
Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence /gb=AK103280
Os.25597
Oryza sativa Japonica Group cDNA clone:J023056C15, full insert sequence /cds=p(769,3495) /gb=AK070569
Os.26144
Oryza sativa Japonica Group cDNA clone:J023022C23, full insert sequence /gb=AK072309
Os.48218
Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds /cds=p(1,3291) /gb=AB071297
Os.48513
Oryza sativa Japonica Group cDNA clone:J033129I11, full insert sequence /gb=AK103452
Os.59273
Oryza sativa (japonica cultivar-group) Os02g0557200 (Os02g0557200) mRNA, complete cds /cds=p(304,2340) /gb=NM_001053672
Os.80192
Oryza sativa Japonica Group cDNA clone:J023093B04, full insert sequence /gb=AK071455
Ppa.12649
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_203442) mRNA, complete cds /cds=p(13,1209) /gb=XM_001754661
Ppa.13893
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_127416) mRNA, partial cds /cds=p(1,2628) /gb=XM_001764015
Ppa.20219
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_135391) mRNA, complete cds /cds=p(1,1236) /gb=XM_001769831
Ppa.20660
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168019) mRNA, complete cds /cds=p(1,3312) /gb=XM_001773444
Pth.9394
Populus trichocarpa clone WS01228_B04 unknown mRNA /cds=p(12,2735) /gb=EF147132

Domain Architecture

B3 PF02362 50215
DomainStartEndBit scoreE-value
B31092141052.3e-28
Auxin_resp236319169.21.1e-47

Sequences