Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5028369

Identification

Species:
Sorghum bicolor
Gene model
5028369
Description
Sb01g009380
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1A0A 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

888270 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g51910.1 Score: 1

Physcomitrella patens

148564 Score: 1
48139 Score: 1

Sorghum bicolor

5000178 Score: 1
5028369 Score: 1

Vitis vinifera

GSVIVP00014998001 Score: 1

Zea mays

GRMZM2G092091_P01 Score: 1

Expression data

Expressed Sequence Tags

At.43391
Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL24-20-N07 /cds=p(842,1942) /gb=AK230347
At.6666
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT3G23690) mRNA, complete cds /cds=p(358,1473) /gb=NM_113273
Hv.20041
HVSMEg0019A10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0019A10f, mRNA sequence /clone=HVSMEg0019A10f /gb=BE455695
Hv.29153
HDP03K04w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP03K04, mRNA sequence /clone=HDP03K04 /gb=EX592218
Mtr.16219
EST506448 KV3 Medicago truncatula cDNA clone pKV3-38O16 5' end, mRNA sequence /clone=pKV3-38O16 /clone_end=5' /gb=BG644829
Os.24540
Oryza sativa (japonica cultivar-group) Os03g0728900 (Os03g0728900) mRNA, complete cds /cds=p(1,984) /gb=NM_001057685
Os.38400
Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence /cds=p(270,1556) /gb=AK121418
Os.60678
Oryza sativa (japonica cultivar-group) Os08g0487700 (Os08g0487700) mRNA, complete cds /cds=p(1,1098) /gb=NM_001068637
Pth.15516
Populus trichocarpa clone WS01214_F06 unknown mRNA /cds=p(18,1064) /gb=EF146811
Vvi.14924
CGF1000813_E01 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IVF_E01 5', mRNA sequence /clone=CAST0007_IVF_E01 /clone_end=5' /gb=CF214173

Domain Architecture

HLH PF00010 5028369
DomainStartEndBit scoreE-value
HLH14519539.31.6e-08

Sequences