Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5030174

Identification

Species:
Sorghum bicolor
Gene model
5030174
Description
Sb01g040450
Family
bHLH
3D structure (top 5)
1AM9 1NKP 1HLO 1NLW 1A0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484332 Score: 1

Arabidopsis thaliana

AT3G25710.1 Score: 1

Carica papaya

evm.TU.supercontig_53.117 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g15440.1 Score: 1

Vitis vinifera

GSVIVP00030280001 Score: 1

Zea mays

GRMZM2G043854_P01 Score: 1

Expression data

Expressed Sequence Tags

At.22148
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT3G25710) mRNA, complete cds /cds=p(80,1114) /gb=NM_113470
Os.54743
Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence /gb=AK106649
Os.56209
Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence /cds=p(216,1253) /gb=AK109616
Os.75856
Oryza sativa (japonica cultivar-group) Os09g0410700 (Os09g0410700) mRNA, complete cds /cds=p(1,1092) /gb=NM_001069685
Vvi.16696
CAP0001_IIF_G03 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0001_IIF_G03 5', mRNA sequence /clone=CAP0001_IIF_G03 /clone_end=5' /gb=CF515146

Domain Architecture

HLH PF00010 5030174
DomainStartEndBit scoreE-value
HLH21126050.37.3e-12

Sequences