Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5033802

Identification

Species:
Sorghum bicolor
Gene model
5033802
Description
Sb02g024750
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1MDY 1NKP 1A0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os09g25040.1 Score: 1

Populus trichocarpa

669610 Score: 1

Vitis vinifera

GSVIVP00017237001 Score: 1

Zea mays

GRMZM2G049817_P02 Score: 1
GRMZM2G049817_P01 Score: 0.967

Expression data

Expressed Sequence Tags

At.20028
Arabidopsis thaliana UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor (UNE12) mRNA, complete cds /cds=p(186,1118) /gb=NM_116493
At.20497
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G03040) mRNA, complete cds /cds=p(175,1083) /gb=NM_100185
At.20792
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT2G24260) mRNA, complete cds /cds=p(46,1098) /gb=NM_127988
At.29300
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT5G58010) mRNA, complete cds /cds=p(1,894) /gb=NM_125186
At.31786
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT4G30980) mRNA, complete cds /cds=p(52,984) /gb=NM_119246
Mtr.9362
EST508467 HOGA Medicago truncatula cDNA clone pHOGA-15A3 5' end, mRNA sequence /clone=pHOGA-15A3 /clone_end=5' /gb=BG646848
Os.59303
Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence /cds=p(249,1823) /gb=AK241924
Os.8790
Oryza sativa Japonica Group cDNA clone:J013042L14, full insert sequence /cds=p(433,1869) /gb=AK065667
Pba.1507
WS02516.B21.1_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_L07 3', mRNA sequence /clone=WS02516_L07 /clone_end=3' /gb=CV243029
Pba.5668
WS02549.C21_B10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_B10 3', mRNA sequence /clone=WS02549_B10 /clone_end=3' /gb=DT491887
Ppa.17602
CAYY6280.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY6280 5', mRNA sequence /clone=CAYY6280 /clone_end=5' /gb=FC369174
Pth.1507
WS02516.B21.1_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_L07 3', mRNA sequence /clone=WS02516_L07 /clone_end=3' /gb=CV243029
Pth.5668
WS02549.C21_B10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_B10 3', mRNA sequence /clone=WS02549_B10 /clone_end=3' /gb=DT491887
Sbi.647
OV1_7_B08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence /gb=BE917791
Vvi.20313
WIN0573.C21_I15 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0573_I15 3', mRNA sequence /clone=WIN0573_I15 /clone_end=3' /gb=EC956370
Vvi.6555
VV_PEd01f08.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241598

Domain Architecture

HLH PF00010 5033802
DomainStartEndBit scoreE-value
HLH24629546.79.2e-11

Sequences