Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5033987

Identification

Species:
Sorghum bicolor
Gene model
5033987
Description
Sb02g027210
Family
bHLH
3D structure (top 5)
1HLO 1NKP 2QL2 1AM9 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os09g29360.1 Score: 1

Zea mays

GRMZM2G015666_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19247
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G22490) mRNA, complete cds /cds=p(104,1018) /gb=NM_102098
At.35130
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (bHLH096) (AT1G72210) mRNA, complete cds /cds=p(277,1239) /gb=NM_105880
Os.46600
Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence /gb=AK058809
Os.55174
Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence /cds=p(116,1207) /gb=AK107626
Os.55338
CI274151 Oryza sativa (japonica cultivar-group) supermix Oryza sativa (japonica cultivar-group) cDNA clone 074-M191R-F07 3', mRNA sequence /clone=074-M191R-F07 /clone_end=3' /gb=CI274151
Pba.11488
WS02549.C21_O13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O13 3', mRNA sequence /clone=WS02549_O13 /clone_end=3' /gb=DT492192
Pba.8837
WS02522.B21_N21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_N21 3', mRNA sequence /clone=WS02522_N21 /clone_end=3' /gb=DT483536
Pth.11488
WS02549.C21_O13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O13 3', mRNA sequence /clone=WS02549_O13 /clone_end=3' /gb=DT492192
Pth.8837
WS02522.B21_N21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_N21 3', mRNA sequence /clone=WS02522_N21 /clone_end=3' /gb=DT483536
Vvi.15939
WIN1154.C21_D01 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1154_D01 3', mRNA sequence /clone=WIN1154_D01 /clone_end=3' /gb=EC995072
Vvi.20015
WIN0520.C21_P17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0520_P17 3', mRNA sequence /clone=WIN0520_P17 /clone_end=3' /gb=EC940864

Domain Architecture

HLH PF00010 5033987
DomainStartEndBit scoreE-value
HLH12117263.29.9e-16

Sequences