Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5033999

Identification

Species:
Sorghum bicolor
Gene model
5033999
Description
Sb02g027430
Family
bHLH
3D structure (top 5)
1AM9 1NKP 1A0A 1AN4 1HLO
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

476021 Score: 1

Arabidopsis thaliana

AT1G68920.3 Score: 1
AT1G68920.1 Score: 0.992
AT1G68920.2 Score: 0.992

Carica papaya

evm.TU.supercontig_1.173 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g29830.1 Score: 1.006
LOC_Os09g29830.2 Score: 1
LOC_Os09g29830.3 Score: 0.972

Populus trichocarpa

566736 Score: 1

Vitis vinifera

GSVIVP00021166001 Score: 1

Zea mays

GRMZM2G007562_P01 Score: 1
GRMZM2G091788_P01 Score: 1

Expression data

Expressed Sequence Tags

At.43391
Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL24-20-N07 /cds=p(842,1942) /gb=AK230347
At.48937
Arabidopsis thaliana isoflavone reductase family protein (AT4G34540) mRNA, complete cds /cds=p(1643,2563) /gb=NM_119619
Hv.20041
HVSMEg0019A10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0019A10f, mRNA sequence /clone=HVSMEg0019A10f /gb=BE455695
Hv.29153
HDP03K04w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP03K04, mRNA sequence /clone=HDP03K04 /gb=EX592218
Mtr.14730
EST5311646 GESD Medicago truncatula cDNA clone pGESD4O22 5' end, mRNA sequence /clone=pGESD4O22 /clone_end=5' /gb=BI309896
Mtr.16219
EST506448 KV3 Medicago truncatula cDNA clone pKV3-38O16 5' end, mRNA sequence /clone=pKV3-38O16 /clone_end=5' /gb=BG644829
Os.24540
Oryza sativa (japonica cultivar-group) Os03g0728900 (Os03g0728900) mRNA, complete cds /cds=p(1,984) /gb=NM_001057685
Os.38400
Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence /cds=p(270,1556) /gb=AK121418
Os.60678
Oryza sativa (japonica cultivar-group) Os08g0487700 (Os08g0487700) mRNA, complete cds /cds=p(1,1098) /gb=NM_001068637
Ppa.22206
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_171809) mRNA, complete cds /cds=p(587,2557) /gb=XM_001781743
Pth.15516
Populus trichocarpa clone WS01214_F06 unknown mRNA /cds=p(18,1064) /gb=EF146811
Pth.9806
WS01227.B21.1_N12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01227_N12 3', mRNA sequence /clone=WS01227_N12 /clone_end=3' /gb=CV237404
Ptp.11417
N038A03 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU815163
Ptp.1886
G127P22.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G127P22 3', mRNA sequence /clone=G127P22 /clone_end=3' /gb=CK093649
Vvi.14924
CGF1000813_E01 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IVF_E01 5', mRNA sequence /clone=CAST0007_IVF_E01 /clone_end=5' /gb=CF214173

Domain Architecture

HLH PF00010 5033999
DomainStartEndBit scoreE-value
HLH26331337.55.3e-08

Sequences