Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5034282

Identification

Species:
Sorghum bicolor
Gene model
5034282
Description
Sb02g032400
Family
C2H2
3D structure (top 5)
2JP9 2CSH 2DLQ 1TF6 2I13
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

917204 Score: 1

Arabidopsis thaliana

AT5G44160.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g38340.1 Score: 1
LOC_Os09g38340.2 Score: 1
LOC_Os09g38340.3 Score: 1

Zea mays

GRMZM2G160508_P01 Score: 1

Expression data

Expressed Sequence Tags

At.13356
Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds /cds=p(67,1875) /gb=AY056174
At.1592
Arabidopsis thaliana JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (JKD) mRNA, complete cds /cds=p(206,1717) /gb=NM_120393
At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
At.54100
Arabidopsis thaliana ATIDD12 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 12); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD12) mRNA, complete cds /cds=p(1,1209) /gb=NM_116501
At.8713
Arabidopsis thaliana NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding (NUC) mRNA, complete cds /cds=p(151,1551) /gb=NM_123783
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Mtr.9921
MTYCV25TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV256295
Os.17568
Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence /gb=AK120603
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.52565
Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence /gb=AK120723
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Os.97953
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence /gb=CT832183
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598

Domain Architecture

zf-C2H2 PF00096 5034282
DomainStartEndBit scoreE-value
zf-C2H2719326.98.3e-05
zf-C2H214716922.30.0021

Sequences