Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5034872

Identification

Species:
Sorghum bicolor
Gene model
5034872
Description
Sb02g043180
Family
C3H
3D structure (top 5)
2E5G 1WF0 3D2W 2FY1 2JVO
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os07g48410.1 Score: 1
LOC_Os07g48410.2 Score: 1

Physcomitrella patens

137259 Score: 1

Sorghum bicolor

5034872 Score: 1
5062368 Score: 1

Sorghum bicolor

5034872 Score: 1
5062368 Score: 1

Populus trichocarpa

647251 Score: 1
675178 Score: 1

Vitis vinifera

GSVIVP00022218001 Score: 1

Zea mays

GRMZM2G015561_P04 Score: 1

Expression data

Expressed Sequence Tags

At.33921
Arabidopsis thaliana RNA binding (AT3G63450) mRNA, complete cds /cds=p(1,1215) /gb=NM_116210
Hv.11655
BES1824107l11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010L117 5-PRIME, mRNA sequence /clone=MPMGp2010L11107 /clone_end=5' /gb=CK125332
Hv.9817
HVSMEg0017F10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0017F10f, mRNA sequence /clone=HVSMEg0017F10f /gb=BE455906
Os.49095
Oryza sativa Japonica Group cDNA, clone: J090052G18, full insert sequence /gb=AK288601
Os.56196
Oryza sativa Japonica Group cDNA clone:002-180-B08, full insert sequence /gb=AK119893
Os.80130
Oryza sativa Japonica Group cDNA clone:J033114B10, full insert sequence /gb=AK102918
Pth.12941
F101P95.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F101P95 5', mRNA sequence /clone=F101P95 /clone_end=5' /gb=CK101595

Domain Architecture

zf-CCCH PF00642 5034872
DomainStartEndBit scoreE-value
zf-CCCH24026523.10.0012

Sequences