Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5036401

Identification

Species:
Sorghum bicolor
Gene model
5036401
Description
Sb03g030770
Family
HB
3D structure (top 5)
2ECB 2DJN 2R5Y 2DA5 2CRA
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

494576 Score: 1

Arabidopsis thaliana

AT5G44180.1 Score: 1

Carica papaya

evm.TU.supercontig_27.2 Score: 1

Sorghum bicolor

4975380 Score: 1
5036401 Score: 0.929

Coccomyxa sp. C-169

82237 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g48820.1 Score: 1

Physcomitrella patens

67495 Score: 1

Populus trichocarpa

216338 Score: 1

Vitis vinifera

GSVIVP00018645001 Score: 1

Zea mays

GRMZM2G159357_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.16581
BJ473219 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal41c06 5', mRNA sequence /clone=baal41c06 /clone_end=5' /gb=BJ473219
Hv.19057
HVSMEg0003O17f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0003O17f, mRNA sequence /clone=HVSMEg0003O17f /gb=AW982679
Hv.757
HVSMEc0005I04f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0005I04f, mRNA sequence /clone=HVSMEc0005I04f /gb=BF618379
Os.15936
Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence /gb=AK107129
Os.6086
Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence /gb=AK121237
Os.81796
SSHD126 Rice callus and differential tissue SSH library Oryza sativa cDNA, mRNA sequence /gb=CA923264

Domain Architecture

Homeobox PF00046 5036401
DomainStartEndBit scoreE-value
Homeobox5511171.82.6e-18
DDT63269179.51.2e-20

Sequences