Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5038896

Identification

Species:
Sorghum bicolor
Gene model
5038896
Description
Sb04g031040
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G060919_P01 Score: 1
GRMZM2G060919_P02 Score: 1
GRMZM2G117538_P01 Score: 1
GRMZM2G117538_P02 Score: 1

Expression data

Expressed Sequence Tags

At.55411
Arabidopsis thaliana transcription factor jumonji (jmj) family protein (AT5G46910) mRNA, complete cds /cds=p(1,2124) /gb=NM_124062
Os.52727
Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence /gb=AK068952
Os.5373
Oryza sativa (japonica cultivar-group) Os02g0696700 (Os02g0696700) mRNA, partial cds /cds=p(1,1422) /gb=NM_001054351
Os.7130
Oryza sativa Japonica Group cDNA clone:J033044E04, full insert sequence /cds=p(259,2835) /gb=AK073475
Ppa.20331
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_167193) mRNA, complete cds /cds=p(1,6099) /gb=XM_001771491

Domain Architecture

JmjC PF02373 5038896
DomainStartEndBit scoreE-value
JmjC111234178.91.5e-50
zf-C5HC2333386383.8e-08

Sequences