Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5044267

Identification

Species:
Sorghum bicolor
Gene model
5044267
Description
Sb07g028945
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1MDY 1A0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G10120.1 Score: 1

Expression data

Expressed Sequence Tags

At.28096
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G68920) mRNA, complete cds /cds=p(609,2069) /gb=NM_105566
At.41276
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G26260) mRNA, complete cds /cds=p(111,1283) /gb=NM_102390
At.43391
Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL24-20-N07 /cds=p(842,1942) /gb=AK230347
Hv.20041
HVSMEg0019A10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0019A10f, mRNA sequence /clone=HVSMEg0019A10f /gb=BE455695
Hv.29153
HDP03K04w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP03K04, mRNA sequence /clone=HDP03K04 /gb=EX592218
Mtr.14730
EST5311646 GESD Medicago truncatula cDNA clone pGESD4O22 5' end, mRNA sequence /clone=pGESD4O22 /clone_end=5' /gb=BI309896
Os.24540
Oryza sativa (japonica cultivar-group) Os03g0728900 (Os03g0728900) mRNA, complete cds /cds=p(1,984) /gb=NM_001057685
Os.32526
Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence /gb=AK103853
Os.5763
Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence /cds=p(332,1777) /gb=AK101063
Os.60678
Oryza sativa (japonica cultivar-group) Os08g0487700 (Os08g0487700) mRNA, complete cds /cds=p(1,1098) /gb=NM_001068637
Ptp.11417
N038A03 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU815163
Sbi.13364
PH1_26_A04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_26_A04_A002 5', mRNA sequence /clone=PH1_26_A04_A002 /clone_end=5' /gb=CF430188 /gi=34442889

Domain Architecture

HLH PF00010 5044267
DomainStartEndBit scoreE-value
HLH18123134.83.4e-07

Sequences