Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5045388

Identification

Species:
Sorghum bicolor
Gene model
5045388
Description
Sb08g019780
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1MDY 1NKP 1A0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480366 Score: 1

Arabidopsis thaliana

AT3G62090.2 Score: 1
AT3G62090.1 Score: 0.933

Oryza sativa subsp. japonica

LOC_Os12g39850.1 Score: 1

Sorghum bicolor

5034588 Score: 1
5045388 Score: 1

Populus trichocarpa

767688 Score: 1
798077 Score: 1

Vitis vinifera

GSVIVP00001460001 Score: 1

Zea mays

GRMZM2G093423_P01 Score: 1

Expression data

Expressed Sequence Tags

At.31542
Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-58-P18 /cds=p(86,1144) /gb=AK228110
At.40499
Arabidopsis thaliana basic helix-loop-helix protein / bHLH protein (AT2G14760) mRNA, complete cds /cds=p(1,987) /gb=NM_127040
Hv.28839
HDP01K19T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP01K19, mRNA sequence /clone=HDP01K19 /gb=EX578118
Os.78914
Oryza sativa (japonica cultivar-group) Os07g0588400 (Os07g0588400) mRNA, complete cds /cds=p(1,840) /gb=NM_001066677

Domain Architecture

HLH PF00010 5045388
DomainStartEndBit scoreE-value
HLH23528235.22.6e-07

Sequences