Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5047670

Identification

Species:
Sorghum bicolor
Gene model
5047670
Description
Sb01g000730
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

473420 Score: 1

Arabidopsis thaliana

AT5G16820.1 Score: 1
AT5G16820.2 Score: 1

Carica papaya

evm.TU.supercontig_90.13 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g63750.1 Score: 1

Physcomitrella patens

108327 Score: 1

Populus trichocarpa

813327 Score: 1

Vitis vinifera

GSVIVP00015710001 Score: 1

Zea mays

GRMZM2G115456_P01 Score: 1

Expression data

Expressed Sequence Tags

At.32971
Arabidopsis thaliana HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1); DNA binding / transcription factor (HSF1) mRNA, complete cds /cds=p(1,1488) /gb=NM_117884
At.5364
Arabidopsis thaliana HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor (HSF3) mRNA, complete cds /cds=p(117,1562) /gb=NM_180501
At.6312
Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds /cds=p(162,1382) /gb=AY045974
Hv.9400
HVSMEm0003A03f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEm0003A03f, mRNA sequence /clone=HVSMEm0003A03f /gb=BI951809
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.40020
Oryza sativa Japonica Group cDNA clone:J023131M03, full insert sequence /cds=p(167,1399) /gb=AK072571
Os.9717
Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence /cds=p(126,1646) /gb=AK100430
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pba.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Ppa.16751
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_206139) mRNA, partial cds /cds=p(377,1177) /gb=XM_001758240
Ppa.23943
CAYY25595.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY25595 5', mRNA sequence /clone=CAYY25595 /clone_end=5' /gb=FC349157
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Pth.9383
Populus trichocarpa clone WS01230_L11 unknown mRNA /cds=p(80,1258) /gb=EF147413
Sbi.12018
EM1_50_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence /gb=BG463670
Sbi.9715
PIC1_29_H03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence /gb=BM323976
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 5047670
DomainStartEndBit scoreE-value
HSF_DNA-bind47222325.69.7e-95

Sequences