Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5048016

Identification

Species:
Sorghum bicolor
Gene model
5048016
Description
Sb01g006190
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1MDY 1NKP 1A0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_8.191 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g56950.1 Score: 1
LOC_Os03g56950.2 Score: 1
LOC_Os03g56950.3 Score: 0.903
LOC_Os03g56950.4 Score: 0.903

Zea mays

GRMZM2G065374_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10926
Arabidopsis thaliana PAP3/PIF3/POC1 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription factor/ transcription regulator (PAP3/PIF3/POC1) mRNA, complete cds /cds=p(251,1825) /gb=NM_179295
Os.44516
Oryza sativa Japonica Group cDNA clone:001-003-G06, full insert sequence /gb=AK060245
Os.5178
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222D24, full insert sequence /gb=CT829013
Sbi.1899
WOUND1_53_D06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_53_D06_A002 5', mRNA sequence /clone=WOUND1_53_D06_A002 /clone_end=5' /gb=CN148006 /gi=45988917

Domain Architecture

HLH PF00010 5048016
DomainStartEndBit scoreE-value
HLH23128065.71.7e-16

Sequences