Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5048494

Identification

Species:
Sorghum bicolor
Gene model
5048494
Description
Sb01g013843
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1A0A 1AN4 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

907404 Score: 1

Arabidopsis thaliana

AT3G59060.1 Score: 1
AT3G59060.2 Score: 1
AT3G59060.3 Score: 1
AT3G59060.4 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g43810.1 Score: 1

Vitis vinifera

GSVIVP00018844001 Score: 1

Zea mays

GRMZM2G165042_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10926
Arabidopsis thaliana PAP3/PIF3/POC1 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription factor/ transcription regulator (PAP3/PIF3/POC1) mRNA, complete cds /cds=p(251,1825) /gb=NM_179295
Hv.12647
AV911091 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vulgare subsp. vulgare cDNA clone baak12a06 3', mRNA sequence /clone=baak12a06 /clone_end=3' /gb=AV911091
Hv.30998
HV_CEb0009B15r2 Hordeum vulgare (Blumeria challenged) seedling green leaf cDNA library HV_CEb (HVcDNA0005)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0003J24f, mRNA sequence /clone=HV__Ea0003J24f /gb=GH208143
Os.19229
Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence /gb=AK060505
Ppa.16935
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_164436) mRNA, complete cds /cds=p(1,2406) /gb=XM_001764550
Sbi.18791
GABR1_67_D04.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_67_D04_A002 3', mRNA sequence /clone=GABR1_67_D04_A002 /clone_end=3' /gb=CX622992 /gi=57821779
Sbi.1899
WOUND1_53_D06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_53_D06_A002 5', mRNA sequence /clone=WOUND1_53_D06_A002 /clone_end=5' /gb=CN148006 /gi=45988917

Domain Architecture

HLH PF00010 5048494
DomainStartEndBit scoreE-value
HLH32937864.24.9e-16

Sequences