Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5049065

Identification

Species:
Sorghum bicolor
Gene model
5049065
Description
Sb01g029000
Family
HB
3D structure (top 5)
1AU7 2DMU 1ZQ3 3CMY 2DJN
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

486512 Score: 1

Arabidopsis thaliana

AT3G60390.1 Score: 1

Carica papaya

evm.TU.supercontig_101.25 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g41230.1 Score: 1

Populus trichocarpa

799722 Score: 1

Vitis vinifera

GSVIVP00019117001 Score: 1

Zea mays

GRMZM2G052642_P01 Score: 1
GRMZM2G148074_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21112
Arabidopsis thaliana HAT3 (homeobox-leucine zipper protein 3); transcription factor (HAT3) mRNA, complete cds /cds=p(217,1164) /gb=NM_115903
At.24419
Arabidopsis thaliana heomeobox protein (HAT4) mRNA, complete cds /cds=p(202,1056) /gb=M90394
At.25127
Arabidopsis thaliana HAT2; transcription factor (HAT2) mRNA, complete cds /cds=p(263,1114) /gb=NM_124108
At.44957
20-L022147-065-007-D03-SeLA MPIZ-ADIS-065f Arabidopsis thaliana cDNA clone 007-D03, mRNA sequence /clone=007-D03 /gb=DR751659
Mtr.1519
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA /cds=m(276,1166) /gb=BT052129
Mtr.17039
EST611139 KVKC Medicago truncatula cDNA clone pKVKC-7D9, mRNA sequence /clone=pKVKC-7D9 /gb=BQ165270
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Os.23861
Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence /cds=p(140,883) /gb=AK122006
Os.4605
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence /gb=CT832945
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Pba.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pba.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Ppa.26054
DC945664 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs8n05 3', mRNA sequence /clone=ppgs8n05 /clone_end=3' /gb=DC945664
Pth.15578
Populus trichocarpa clone WS0122_O02 unknown mRNA /cds=p(72,1196) /gb=EF147352
Pth.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pth.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Sbi.11595
GABR1_1_C05.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1_C05_A002 5', mRNA sequence /clone=GABR1_1_C05_A002 /clone_end=5' /gb=CX612281 /gi=57811001
Sbi.4024
NIT1_25_E11.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_25_E11_A002 5', mRNA sequence /clone=NIT1_25_E11_A002 /clone_end=5' /gb=CF433214 /gi=34445915
Vvi.8463
WIN061.C21_D09 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_D09 3', mRNA sequence /clone=WIN061_D09 /clone_end=3' /gb=EC956931

Domain Architecture

HD-ZIP_N PF04618 5049065
DomainStartEndBit scoreE-value
HD-ZIP_N516288.52.3e-23
Homeobox19524968.82e-17
HALZ250294783.5e-20

Sequences