Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5049432

Identification

Species:
Sorghum bicolor
Gene model
5049432
Description
Sb01g035540
Family
Jumonji
3D structure (top 5)
3D8C
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470987 Score: 1

Arabidopsis thaliana

AT1G09060.3 Score: 1
AT1G09060.1 Score: 0.977
AT1G09060.2 Score: 0.977

Carica papaya

evm.TU.supercontig_48.75 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g22540.1 Score: 1

Populus trichocarpa

570810 Score: 1

Vitis vinifera

GSVIVP00022742001 Score: 1

Zea mays

GRMZM2G128505_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.16397
BES1824107d17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010D177 5-PRIME, mRNA sequence /clone=MPMGp2010D17107 /clone_end=5' /gb=CK125203
Os.5672
Oryza sativa Japonica Group cDNA, clone: J100081J07, full insert sequence /gb=AK289253
Os.79778
Oryza sativa (japonica cultivar-group) Os02g0109400 (Os02g0109400) mRNA, complete cds /cds=p(1,2994) /gb=NM_001052179
Pba.1590
WS02514.B21.1_A09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02514_A09 3', mRNA sequence /clone=WS02514_A09 /clone_end=3' /gb=CV242061
Pth.1590
WS02514.B21.1_A09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02514_A09 3', mRNA sequence /clone=WS02514_A09 /clone_end=3' /gb=CV242061
Vvi.11982
CAP0006_IVR_F05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0006_IVR_F05 3', mRNA sequence /clone=CAP0006_IVR_F05 /clone_end=3' /gb=CF519154
Vvi.2997
CA12EI302IF_E11 Cabernet Sauvignon Leaf - CA12EI Vitis vinifera cDNA clone CA12EI302IF_E11 5', mRNA sequence /clone=CA12EI302IF_E11 /clone_end=5' /gb=CA816066

Domain Architecture

WRC PF08879 5049432
DomainStartEndBit scoreE-value
WRC44975.42.1e-19
JmjC68980512.65.8e-05

Sequences