Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5050036

Identification

Species:
Sorghum bicolor
Gene model
5050036
Description
Sb01g044480
Family
CAMTA
3D structure (top 5)
2VGE 2FO1 1YCS 3DEO 2RFM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

4772032 Score: 1
5050036 Score: 1

Arabidopsis lyrata

487754 Score: 1
919730 Score: 1

Arabidopsis thaliana

AT5G09410.2 Score: 1
AT5G09410.1 Score: 0.962

Oryza sativa subsp. japonica

LOC_Os03g09100.1 Score: 1

Populus trichocarpa

207404 Score: 1

Vitis vinifera

GSVIVP00008414001 Score: 1

Zea mays

GRMZM2G147487_P01 Score: 1

Expression data

Expressed Sequence Tags

At.26762
Arabidopsis thaliana EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN) (EICBP.B) mRNA, complete cds /cds=p(190,3213) /gb=NM_001125723
Hv.902
HVSMEk0022P07f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEk0022P07f, mRNA sequence /clone=HVSMEk0022P07f /gb=BG418518
Mtr.14133
EST611426 KVKC Medicago truncatula cDNA clone pKVKC-10B2, mRNA sequence /clone=pKVKC-10B2 /gb=BQ165557
Mtr.20634
METAO19TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY476154
Mtr.8266
s13dNF74E04MJ035_330910 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence /gb=CX534604
Os.11702
Oryza sativa (japonica cultivar-group) Os04g0388500 (Os04g0388500) mRNA, complete cds /cds=p(306,3317) /gb=NM_001059165
Os.13903
Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence /gb=AK066651
Os.25048
Oryza sativa Japonica Group cDNA clone:J033041A20, full insert sequence /gb=AK101479
Os.49503
Oryza sativa (japonica cultivar-group) Os03g0388500 (Os03g0388500) mRNA, partial cds /cds=p(3,896) /gb=NM_001056800
Os.97411
OSJNEf08I05.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA clone OSJNEf08I05 5', mRNA sequence /clone=OSJNEf08I05 /clone_end=5' /gb=CB681818
Sbi.12536
OV2_31_B04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence /gb=BG357536
Sbi.5793
WOUND1_83_H11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_83_H11_A002 5', mRNA sequence /clone=WOUND1_83_H11_A002 /clone_end=5' /gb=CN152740 /gi=45997022

Domain Architecture

CG-1 PF03859 5050036
DomainStartEndBit scoreE-value
CG-118136302.21.1e-87
Ank6066385.85.3
Ank63967135.42.2e-07
IQ81483421.80.0029
IQ83785728.92.1e-05

Sequences