Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5052346

Identification

Species:
Sorghum bicolor
Gene model
5052346
Description
Sb03g000570
Family
bHLH
3D structure (top 5)
1HLO 1NKP 1AM9 1NLW 2QL2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470147 Score: 1

Arabidopsis thaliana

AT1G01260.1 Score: 1
AT1G01260.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g13460.1 Score: 1

Populus trichocarpa

755405 Score: 1

Vitis vinifera

GSVIVP00008627001 Score: 1

Zea mays

GRMZM2G100182_P01 Score: 1
GRMZM2G148723_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19872
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT2G46510) mRNA, complete cds /cds=p(429,2129) /gb=NM_130216
At.4413
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT4G16430) mRNA, complete cds /cds=p(252,1655) /gb=NM_117738
Hv.20568
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144n21, mRNA sequence /gb=AK252240
Hv.4692
AV929991 K. Sato unpublished cDNA library, cv. Haruna Nijo second leaf stage seedling leaves Hordeum vulgare subsp. vulgare cDNA clone basd17g05 3', mRNA sequence /clone=basd17g05 /clone_end=3' /gb=AV929991
Os.41914
Oryza sativa Japonica Group cDNA clone:J013000P16, full insert sequence /gb=AK064946
Os.45983
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA221E23, full insert sequence /gb=CT833046
Pba.10315
WS02531.BR_G12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_G12 5', mRNA sequence /clone=WS02531_G12 /clone_end=5' /gb=DT481271
Pth.10315
WS02531.BR_G12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_G12 5', mRNA sequence /clone=WS02531_G12 /clone_end=5' /gb=DT481271
Sbi.7805
RHOH1_34_C10.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_34_C10_A002 3', mRNA sequence /clone=RHOH1_34_C10_A002 /clone_end=3' /gb=CN129204 /gi=45956756
Vvi.3521
VV_PEd18b04.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242837

Domain Architecture

HLH PF00010 5052346
DomainStartEndBit scoreE-value
HLH465514491.9e-11

Sequences