Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5054245

Identification

Species:
Sorghum bicolor
Gene model
5054245
Description
Sb03g043690
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1A0A 1AN4
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

872116 Score: 1

Arabidopsis thaliana

AT3G07340.1 Score: 1

Carica papaya

evm.TU.supercontig_157.5 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g68700.2 Score: 1

Populus trichocarpa

553223 Score: 1

Vitis vinifera

GSVIVP00031646001 Score: 1

Zea mays

GRMZM2G180406_P01 Score: 1
GRMZM2G180406_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.20041
HVSMEg0019A10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0019A10f, mRNA sequence /clone=HVSMEg0019A10f /gb=BE455695
Mtr.14730
EST5311646 GESD Medicago truncatula cDNA clone pGESD4O22 5' end, mRNA sequence /clone=pGESD4O22 /clone_end=5' /gb=BI309896
Mtr.16219
EST506448 KV3 Medicago truncatula cDNA clone pKV3-38O16 5' end, mRNA sequence /clone=pKV3-38O16 /clone_end=5' /gb=BG644829
Os.5763
Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence /cds=p(332,1777) /gb=AK101063
Os.87970
Oryza sativa Japonica Group cDNA clone:002-146-G10, full insert sequence /cds=p(169,960) /gb=AK108605
Ppa.22206
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_171809) mRNA, complete cds /cds=p(587,2557) /gb=XM_001781743
Ptp.11417
N038A03 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU815163
Ptp.1936
G114P84.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G114P84 3', mRNA sequence /clone=G114P84 /clone_end=3' /gb=CK093312
Sbi.13364
PH1_26_A04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_26_A04_A002 5', mRNA sequence /clone=PH1_26_A04_A002 /clone_end=5' /gb=CF430188 /gi=34442889
Sbi.3272
OX1_37_H11.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_37_H11_A002 5', mRNA sequence /clone=OX1_37_H11_A002 /clone_end=5' /gb=CN135609 /gi=45967916
Vvi.14924
CGF1000813_E01 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IVF_E01 5', mRNA sequence /clone=CAST0007_IVF_E01 /clone_end=5' /gb=CF214173

Domain Architecture

HLH PF00010 5054245
DomainStartEndBit scoreE-value
HLH28733736.51.1e-07

Sequences