Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5054790

Identification

Species:
Sorghum bicolor
Gene model
5054790
Description
Sb04g005580
Family
ARR-B
3D structure (top 5)
1K68 1XHF 3GT7 1QKK 2ZAY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

857408 Score: 1

Arabidopsis thaliana

AT4G31920.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g08500.1 Score: 1

Populus trichocarpa

825773 Score: 1

Vitis vinifera

GSVIVP00032706001 Score: 1

Zea mays

GRMZM2G152293_P01 Score: 1

Expression data

Expressed Sequence Tags

At.121
Arabidopsis thaliana ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator (ARR11) mRNA, complete cds /cds=p(240,1805) /gb=NM_105439
At.19775
Arabidopsis thaliana ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator (ARR12) mRNA, complete cds /cds=p(1,1791) /gb=NM_128075
At.21955
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-13-O13 /cds=p(293,2287) /gb=AK176614
At.42470
Arabidopsis thaliana ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator (ARR14) mRNA, complete cds /cds=p(75,1223) /gb=NM_126237
At.48672
Arabidopsis thaliana ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator (ARR1) mRNA, complete cds /cds=p(293,2365) /gb=NM_112561
Hv.10585
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf58b24, mRNA sequence /gb=AK248322
Mtr.6502
EST648250 KV3 Medicago truncatula cDNA clone KV3-49B6, mRNA sequence /clone=KV3-49B6 /gb=CB891281
Os.11949
Oryza sativa Japonica Group cDNA clone:J033025G23, full insert sequence /cds=p(258,2333) /gb=AK111864
Os.27847
Oryza sativa Japonica Group cDNA clone:J023101H04, full insert sequence /cds=p(159,2039) /gb=AK100530
Os.5243
Oryza sativa Japonica Group cDNA clone:J013002L12, full insert sequence /gb=AK065276
Os.80390
Oryza sativa (japonica cultivar-group) Os06g0647200 (Os06g0647200) mRNA, complete cds /cds=p(1,2085) /gb=NM_001064739
Os.82062
AF53-Rpf_04_O22_T7_095.ab1 IRRI Drought Stress Panicle Library Oryza sativa (indica cultivar-group) cDNA clone C0001510 5' similar to unknown, mRNA sequence /clone=C0001510 /clone_end=5' /gb=CA764787
Os.87872
Oryza sativa (japonica cultivar-group) Os06g0183100 (Os06g0183100) mRNA, complete cds /cds=p(884,2974) /gb=NM_001063521
Ppa.9285
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_123034) mRNA, partial cds /cds=p(1,786) /gb=XM_001760314
Pth.6869
WS02536.B21_J08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_J08 3', mRNA sequence /clone=WS02536_J08 /clone_end=3' /gb=DT488490
Sbi.16926
GABR1_30_G04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_30_G04_A002 5', mRNA sequence /clone=GABR1_30_G04_A002 /clone_end=5' /gb=CX616946 /gi=57815733
Vvi.10343
S1G02258 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G02258, mRNA sequence /clone=S1G02258 /gb=EE075816
Vvi.8548
EST 13354 Green Grape (harvested at 5 p.m.) Pedicles Lambda Triplex2 Library Vitis vinifera cDNA clone P3CH5BGP001D05 3', mRNA sequence /clone=P3CH5BGP001D05 /clone_end=3' /gb=CD800109

Domain Architecture

Response_reg PF00072 5054790
DomainStartEndBit scoreE-value
Response_reg30141105.61.7e-28
Myb_DNA-binding21526551.33.9e-12
G2-like218265116.99.7e-35

Sequences

protein sequence
transcript sequence