Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5056382

Identification

Species:
Sorghum bicolor
Gene model
5056382
Description
Sb05g003750
Family
HB
3D structure (top 5)
2DMN 1B72 1DU6 1PUF 1X2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

482564 Score: 1

Arabidopsis thaliana

AT2G35940.1 Score: 1
AT2G35940.2 Score: 1
AT2G35940.3 Score: 1

Carica papaya

evm.TU.supercontig_104.22 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g06020.1 Score: 1

Populus trichocarpa

256272 Score: 1

Vitis vinifera

GSVIVP00038902001 Score: 1

Zea mays

GRMZM2G158350_P01 Score: 1
GRMZM2G158350_P02 Score: 1
GRMZM2G158350_P03 Score: 1
GRMZM2G158350_P04 Score: 1
GRMZM2G158350_P05 Score: 1
GRMZM2G158350_P06 Score: 1

Expression data

Expressed Sequence Tags

At.12624
Arabidopsis thaliana BLH4 (SAWTOOTH 2); DNA binding / transcription factor (BLH4) mRNA, complete cds /cds=p(261,2144) /gb=NM_179713
At.16254
Arabidopsis thaliana BLH3 (BLH3) mRNA, complete cds /cds=p(682,2256) /gb=NM_001084358
At.48946
Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds /cds=p(853,3072) /gb=AY050459
At.50395
Arabidopsis thaliana BLH6 (BELL1-LIKE HOMEODOMAIN 5); DNA binding / transcription factor (BLH6) mRNA, complete cds /cds=p(325,1923) /gb=NM_119627
At.69176
Arabidopsis thaliana At4g34610 gene, complete cds /cds=p(1,1599) /gb=BT012291
At.74048
Arabidopsis thaliana BLH7 (BELL1-LIKE HOMEODOMAIN 7); DNA binding / transcription factor (BLH7) mRNA, complete cds /cds=p(548,1996) /gb=NM_127194
At.74119
Arabidopsis thaliana clone 142443 mRNA, complete sequence /cds=p(28,1602) /gb=AY085278
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Mtr.22349
META209TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474128
Os.11805
Oryza sativa (japonica cultivar-group) Os11g0158600 (Os11g0158600) mRNA, complete cds /cds=p(1,1278) /gb=NM_001072340
Os.17301
Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence /cds=p(231,1991) /gb=AK068029
Os.21068
Oryza sativa Japonica Group cDNA clone:J013104D06, full insert sequence /gb=AK099829
Os.27062
Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence /gb=AK287476
Os.27423
Oryza sativa Japonica Group cDNA clone:J023014M03, full insert sequence /gb=AK120813
Os.7976
Oryza sativa Japonica Group cDNA clone:J023057H24, full insert sequence /gb=AK070543
Sbi.13375
WS1_94_G11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence /gb=BE592442
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936

Domain Architecture

POX PF07526 5056382
DomainStartEndBit scoreE-value
POX172314239.48.8e-69
Homeobox3674255.50.0035

Sequences