Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5057670

Identification

Species:
Sorghum bicolor
Gene model
5057670
Description
Sb06g025060
Family
bHLH
3D structure (top 5)
1NKP 1AM9 1HLO 1NLW 2QL2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

4828678 Score: 1
5057670 Score: 1

Arabidopsis thaliana

AT1G63650.1 Score: 1
AT1G63650.2 Score: 1
AT5G41315.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g47080.1 Score: 1

Physcomitrella patens

140422 Score: 1

Sorghum bicolor

4828678 Score: 1
5057670 Score: 1

Zea mays

GRMZM2G172795_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.27189
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45m21, mRNA sequence /gb=AK249503
Hv.30821
HX04H02r HX Hordeum vulgare subsp. vulgare cDNA clone HX04H02 5-PRIME, mRNA sequence /clone=HX04H02 /clone_end=5' /gb=BQ470921
Mtr.17547
EST530048 GPOD Medicago truncatula cDNA clone pGPOD-7O4 5' end, mRNA sequence /clone=pGPOD-7O4 /clone_end=5' /gb=BI308638
Os.2233
Oryza sativa transcriptional activator (Ra) mRNA, complete cds /cds=p(456,2216) /gb=U39860
Os.49810
Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence /cds=p(137,1816) /gb=AK111704
Os.57542
Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds /cds=p(55,1410) /gb=AB021080
Os.79112
Oryza sativa (japonica cultivar-group) Os01g0576100 (Os01g0576100) mRNA, complete cds /cds=p(1,786) /gb=NM_001049926

Domain Architecture

HLH PF00010 5057670
DomainStartEndBit scoreE-value
HLH39544447.84.1e-11

Sequences