Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5059881

Identification

Species:
Sorghum bicolor
Gene model
5059881
Description
Sb08g022960
Family
HB
3D structure (top 5)
2DMN 1B72 1X2N 1PUF 1DU6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

912924 Score: 1

Arabidopsis thaliana

AT4G34610.1 Score: 1
AT4G34610.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g43950.1 Score: 1
LOC_Os12g43950.2 Score: 1
LOC_Os12g43950.3 Score: 1
LOC_Os12g43950.4 Score: 1

Populus trichocarpa

721939 Score: 1

Vitis vinifera

GSVIVP00035919001 Score: 1

Zea mays

GRMZM2G099319_P01 Score: 1

Expression data

Expressed Sequence Tags

At.12624
Arabidopsis thaliana BLH4 (SAWTOOTH 2); DNA binding / transcription factor (BLH4) mRNA, complete cds /cds=p(261,2144) /gb=NM_179713
At.14305
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX820985
At.26495
Arabidopsis thaliana At1g19700/F6F9_29 mRNA, complete cds /cds=p(362,1165) /gb=AY052366
At.48946
Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds /cds=p(853,3072) /gb=AY050459
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Mtr.7013
AC4843 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY618467
Os.21068
Oryza sativa Japonica Group cDNA clone:J013104D06, full insert sequence /gb=AK099829
Os.27062
Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence /gb=AK287476
Os.6492
Oryza sativa Japonica Group cDNA clone:J023054P21, full insert sequence /cds=p(789,2732) /gb=AK070465
Os.7976
Oryza sativa Japonica Group cDNA clone:J023057H24, full insert sequence /gb=AK070543
Ptp.5611
G095P48.5pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G095P48 5', mRNA sequence /clone=G095P48 /clone_end=5' /gb=DN493660
Sbi.14265
HS1_50_B01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_50_B01_A012 5', mRNA sequence /clone=HS1_50_B01_A012 /clone_end=5' /gb=CD210350 /gi=30945366
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936

Domain Architecture

POX PF07526 5059881
DomainStartEndBit scoreE-value
POX199340265.71.1e-76
Homeobox3904486.90.0025

Sequences