Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5060037

Identification

Species:
Sorghum bicolor
Gene model
5060037
Description
Sb09g002520
Family
HB
3D structure (top 5)
1X2N 1PUF 2D5V 2DMN 1B72
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Ostreococcus lucimarinus

5313 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03884.1 Score: 1

Selaginella moellendorffii

159366 Score: 1
415291 Score: 1

Sorghum bicolor

5048052 Score: 1
5060037 Score: 1

Zea mays

GRMZM2G051366_P02 Score: 1
GRMZM2G094241_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10801
Arabidopsis thaliana STM (SHOOT MERISTEMLESS); transcription factor (STM) mRNA, complete cds /cds=p(1,1149) /gb=NM_104916
At.21162
A.thaliana mRNA for ATK1 protein /cds=p(97,1032) /gb=X81353
At.26286
Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds /cds=p(160,1143) /gb=BT002930
Hv.12878
Hordeum vulgare knotted 1 (kn1) mRNA, complete cds /cds=p(35,1084) /gb=AF544045
Hv.26993
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence /gb=AK248600
Mtr.121
Medicago truncatula knotted class I homeodomain KNOX mRNA, complete cds /cds=p(10,1155) /gb=AF308454
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Os.151
Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds /cds=p(1065,2150) /gb=D16507
Os.4162
Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence /cds=p(501,1436) /gb=AK111878
Os.4163
Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence /gb=AK241312
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Pth.3282
Populus trichocarpa clone WS01119_M04 unknown mRNA /cds=p(151,1008) /gb=EF144909
Sbi.13097
Sorghum bicolor KNOTTED1 homeodomain protein (KN1) mRNA, partial cds /cds=p(1,1044) /gb=DQ317417
Sbi.19141
ANR1_20_E03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_20_E03_A002 3', mRNA sequence /clone=ANR1_20_E03_A002 /clone_end=3' /gb=CX610679 /gi=57809399
Vvi.20404
VV_PEd05f05.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242359
Vvi.8600
WIN027.TB24.1_E07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_E07 3', mRNA sequence /clone=WIN027_E07 /clone_end=3' /gb=EC924955

Domain Architecture

KNOX1 PF03790 5060037
DomainStartEndBit scoreE-value
KNOX1509487.16e-23
KNOX298149107.35e-29
ELK18820935.12.7e-07
Homeobox2112705.30.0036

Sequences