Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5061012

Identification

Species:
Sorghum bicolor
Gene model
5061012
Description
Sb09g029330
Family
C3H
3D structure (top 5)
1M9O 2E5S 2CQE 2RPP 3D2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

475777 Score: 1

Arabidopsis thaliana

AT1G66810.1 Score: 1

Carica papaya

evm.TU.supercontig_170.23 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g50080.1 Score: 1

Vitis vinifera

GSVIVP00030418001 Score: 1

Zea mays

GRMZM2G149347_P01 Score: 1

Expression data

Expressed Sequence Tags

Os.30567
Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence /gb=AK108658
Os.54644
Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence /cds=p(160,1191) /gb=AK106354
Pba.2501
WS01914.B21_C20 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_C20 3', mRNA sequence /clone=WS01914_C20 /clone_end=3' /gb=CV229704
Pth.2501
WS01914.B21_C20 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_C20 3', mRNA sequence /clone=WS01914_C20 /clone_end=3' /gb=CV229704
Vvi.4930
CAB2SG0006_IaF_B07 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0006_IaF_B07 5', mRNA sequence /clone=CAB2SG0006_IaF_B07 /clone_end=5' /gb=CB349575

Domain Architecture

zf-CCCH PF00642 5061012
DomainStartEndBit scoreE-value
zf-CCCH25728352.12.1e-12
zf-CCCH29532125.70.00019

Sequences