Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5061213

Identification

Species:
Sorghum bicolor
Gene model
5061213
Description
Sb10g002020
Family
BBR/BPC

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480982 Score: 1

Arabidopsis thaliana

AT5G42520.1 Score: 1
AT5G42520.2 Score: 0.952

Carica papaya

evm.TU.supercontig_150.9 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g04010.1 Score: 1
LOC_Os06g04010.2 Score: 1

Populus trichocarpa

831667 Score: 1

Zea mays

GRMZM2G118690_P01 Score: 1
GRMZM2G118690_P02 Score: 1
GRMZM2G118690_P03 Score: 1
GRMZM2G165310_P01 Score: 1
GRMZM2G165310_P02 Score: 1

Expression data

Expressed Sequence Tags

At.30165
Arabidopsis thaliana ATBPC6/BBR/BPC6/BPC6 (BASIC PENTACYSTEINE 6); DNA binding / transcription factor (ATBPC6/BBR/BPC6/BPC6) mRNA, complete cds /cds=p(264,1292) /gb=NM_123617
Hv.23443
HVSMEa0011A17f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEa0011A17f, mRNA sequence /clone=HVSMEa0011A17f /gb=BF621456
Mtr.11941
Medicago truncatula GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds /cds=p(295,1251) /gb=EF102094
Os.10575
Oryza sativa Japonica Group cDNA clone:J023060O20, full insert sequence /cds=p(280,1275) /gb=AK070616
Pth.2429
F037P02.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F037P02 3', mRNA sequence /clone=F037P02 /clone_end=3' /gb=CK090985
Ptp.1180
R021D04 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU885150
Sbi.8384
OX1_30_E08.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_30_E08_A002 3', mRNA sequence /clone=OX1_30_E08_A002 /clone_end=3' /gb=CN135044 /gi=45966996
Vvi.12393
Vitis vinifera GAGA-binding transcriptional activator BBR/BPC4-like mRNA, complete cds /cds=p(139,1062) /gb=EU597745
Vvi.3407
Vitis vinifera GAGA-binding transcriptional activator BBR/BPC6-like mRNA, complete cds /cds=p(175,1188) /gb=EU597747

Domain Architecture

DUF1004 PF06217 5061213
DomainStartEndBit scoreE-value
DUF100413296588.9e-195

Sequences