Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5061408

Identification

Species:
Sorghum bicolor
Gene model
5061408
Description
Sb10g005580
Family
ARR-B
3D structure (top 5)
1QKK 3HDG 1IRZ 1NY5 1W25
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

481375 Score: 1

Arabidopsis thaliana

AT2G25180.1 Score: 1

Carica papaya

evm.TU.supercontig_46.119 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g08440.1 Score: 1

Zea mays

GRMZM2G109616_P01 Score: 1
GRMZM2G154081_P01 Score: 1
GRMZM2G109616_P02 Score: 0.939
GRMZM2G154081_P02 Score: 0.939

Expression data

Expressed Sequence Tags

At.121
Arabidopsis thaliana ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator (ARR11) mRNA, complete cds /cds=p(240,1805) /gb=NM_105439
At.122
Arabidopsis thaliana ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator (ARR10) mRNA, complete cds /cds=p(194,1852) /gb=NM_119343
At.19775
Arabidopsis thaliana ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator (ARR12) mRNA, complete cds /cds=p(1,1791) /gb=NM_128075
At.21955
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-13-O13 /cds=p(293,2287) /gb=AK176614
At.29298
Arabidopsis thaliana ARR18 (ARABIDOPSIS RESPONSE REGULATOR 18); transcription factor/ two-component response regulator (ARR18) mRNA, complete cds /cds=p(45,1901) /gb=NM_125193
Hv.10585
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf58b24, mRNA sequence /gb=AK248322
Mtr.6502
EST648250 KV3 Medicago truncatula cDNA clone KV3-49B6, mRNA sequence /clone=KV3-49B6 /gb=CB891281
Os.11949
Oryza sativa Japonica Group cDNA clone:J033025G23, full insert sequence /cds=p(258,2333) /gb=AK111864
Os.27847
Oryza sativa Japonica Group cDNA clone:J023101H04, full insert sequence /cds=p(159,2039) /gb=AK100530
Os.5243
Oryza sativa Japonica Group cDNA clone:J013002L12, full insert sequence /gb=AK065276
Os.82062
AF53-Rpf_04_O22_T7_095.ab1 IRRI Drought Stress Panicle Library Oryza sativa (indica cultivar-group) cDNA clone C0001510 5' similar to unknown, mRNA sequence /clone=C0001510 /clone_end=5' /gb=CA764787
Os.87872
Oryza sativa (japonica cultivar-group) Os06g0183100 (Os06g0183100) mRNA, complete cds /cds=p(884,2974) /gb=NM_001063521
Ppa.9285
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_123034) mRNA, partial cds /cds=p(1,786) /gb=XM_001760314
Sbi.10214
OV1_20_B11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence /gb=BG049455
Sbi.16926
GABR1_30_G04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_30_G04_A002 5', mRNA sequence /clone=GABR1_30_G04_A002 /clone_end=5' /gb=CX616946 /gi=57815733
Sbi.7122
SA1_17_E09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_17_E09_A002 3', mRNA sequence /clone=SA1_17_E09_A002 /clone_end=3' /gb=CD427069 /gi=31333332
Vvi.10343
S1G02258 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G02258, mRNA sequence /clone=S1G02258 /gb=EE075816

Domain Architecture

Response_reg PF00072 5061408
DomainStartEndBit scoreE-value
Response_reg2213394.73.3e-25
Myb_DNA-binding21326349.21.6e-11
G2-like216263121.63.6e-36

Sequences