Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5061412

Identification

Species:
Sorghum bicolor
Gene model
5061412
Description
Sb10g005650
Family
bHLH
3D structure (top 5)
1HLO 1MDY 1NKP 1A0A 1AM9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G067654_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20028
Arabidopsis thaliana UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor (UNE12) mRNA, complete cds /cds=p(186,1118) /gb=NM_116493
At.20497
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G03040) mRNA, complete cds /cds=p(175,1083) /gb=NM_100185
At.20792
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT2G24260) mRNA, complete cds /cds=p(46,1098) /gb=NM_127988
At.29300
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT5G58010) mRNA, complete cds /cds=p(1,894) /gb=NM_125186
At.31786
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT4G30980) mRNA, complete cds /cds=p(52,984) /gb=NM_119246
Hv.30442
BES1824102b18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010B182 5-PRIME, mRNA sequence /clone=MPMGp2010B18102 /clone_end=5' /gb=CK123102
Os.59303
Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence /cds=p(249,1823) /gb=AK241924
Os.8790
Oryza sativa Japonica Group cDNA clone:J013042L14, full insert sequence /cds=p(433,1869) /gb=AK065667
Pba.1507
WS02516.B21.1_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_L07 3', mRNA sequence /clone=WS02516_L07 /clone_end=3' /gb=CV243029
Ppa.17602
CAYY6280.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY6280 5', mRNA sequence /clone=CAYY6280 /clone_end=5' /gb=FC369174
Pth.1507
WS02516.B21.1_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_L07 3', mRNA sequence /clone=WS02516_L07 /clone_end=3' /gb=CV243029
Sbi.647
OV1_7_B08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence /gb=BE917791
Vvi.20313
WIN0573.C21_I15 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0573_I15 3', mRNA sequence /clone=WIN0573_I15 /clone_end=3' /gb=EC956370
Vvi.6555
VV_PEd01f08.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241598

Domain Architecture

HLH PF00010 5061412
DomainStartEndBit scoreE-value
HLH22026946.51e-10

Sequences