Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 5061446

Identification

Species:
Sorghum bicolor
Gene model
5061446
Description
Sb10g006250
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1A0A 1AN4
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os06g09370.1 Score: 1
LOC_Os06g09370.2 Score: 1

Zea mays

GRMZM2G024530_P01 Score: 1
GRMZM2G060710_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20028
Arabidopsis thaliana UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor (UNE12) mRNA, complete cds /cds=p(186,1118) /gb=NM_116493
At.20497
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G03040) mRNA, complete cds /cds=p(175,1083) /gb=NM_100185
At.20792
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT2G24260) mRNA, complete cds /cds=p(46,1098) /gb=NM_127988
At.29300
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT5G58010) mRNA, complete cds /cds=p(1,894) /gb=NM_125186
At.31786
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT4G30980) mRNA, complete cds /cds=p(52,984) /gb=NM_119246
Hv.1322
MCG002.G04R990625 ITEC MCG Barley Leaf/Culm Library Hordeum vulgare cDNA clone MCG002.G04, mRNA sequence /clone=MCG002.G04 /gb=BE412561
Hv.30442
BES1824102b18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010B182 5-PRIME, mRNA sequence /clone=MPMGp2010B18102 /clone_end=5' /gb=CK123102
Os.59303
Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence /cds=p(249,1823) /gb=AK241924
Os.8790
Oryza sativa Japonica Group cDNA clone:J013042L14, full insert sequence /cds=p(433,1869) /gb=AK065667
Os.96469
S345L_G10 Rice cold stress germination cDNA library Oryza sativa (japonica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CB035355
Pba.1507
WS02516.B21.1_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_L07 3', mRNA sequence /clone=WS02516_L07 /clone_end=3' /gb=CV243029
Pth.1507
WS02516.B21.1_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_L07 3', mRNA sequence /clone=WS02516_L07 /clone_end=3' /gb=CV243029
Sbi.16108
CCC1_16_H08.b1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_16_H08_A007 3', mRNA sequence /clone=CCC1_16_H08_A007 /clone_end=3' /gb=CD229471 /gi=30972905
Sbi.5884
POL1_67_H08.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_67_H08_A002 5', mRNA sequence /clone=POL1_67_H08_A002 /clone_end=5' /gb=CF480793 /gi=34509662
Vvi.6555
VV_PEd01f08.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241598

Domain Architecture

HLH PF00010 5061446
DomainStartEndBit scoreE-value
HLH327376477.4e-11

Sequences